AquaProt
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AquaProt analyses protein-protein binding interface, defines inter-residue interaction map within
the interface and extracts related water molecules.
The method for the interaction map definition is described in the help page
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Enter the PDB ID for
the structure you want to analyze
(find it with
 )
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(i.e. 1JTG) |
| or browse here a PDB-like file to upload | |
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| Optional parameters: |
| Enter distance to water |
(default is 3.5A) |
| browse for a file listing the amino acids to be analyzed (no interface or cluster search will be made) input example | |
| Check here to analyze Ala as main chain | |
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| References:
D. Reichmann, M. Cohen, R. Abramovich, D. Lim, Dym O., N.C.J. Strynadka and G. Schreiber
"Binding hot spots in the TEM1-BLIP interface in light of its modular architecture",
J. Mol. Biol. 2007, 365(3):663-79,
abstract.
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| For comments and questions email to Dana Reichmann
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AquaProt by
Asaf Carmi,
Mati Cohen,
Dana Reichmann,
and
Jaime Prilusky, 2007
Bioinformatics and Biological Computing
Weizmann Institute of Science
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