PSSM of composite HTH block EC0157. Block made up from 609 known and putative HTH sequences. PSSM calculated using sequence weights and expected amino acid frequencies.


        Positions
   1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20  21  22  23  24
nulls*
A Ala
   1   7   5  14  70   6   7   8   1   -   3   3   7   8   3   1   2   2   2   3   3   3   1   7
  1
C Cys
   1   4   1   3   7   1   2   9   4   9   1   1   1   -   2   -   1   -   5   7   1   -   2   1
  4
D Asp
   1   4  15   -   -   9   2   -   6   -   5   5   2   -   -   -   1   1   -   2   8   1   4   4
  8
E Glu
   2  11  29   -   1  19  14   1   4   1   3  11   5   1   -   2   2   1   2   2   4   2  17   9
  2
F Phe
   8   1   -   1   -   -   2   6   2   5   2   1   -   1   4   7   2   2  29   7   -   5   3   5
  5
G Gly
   -   4   1   -   3   1   1   -  34   -   2   1   5   1   -   2   1   -   -   2   3   1   6   3
  7
H His
   2   3   4   -   -   6   4   1  11   -   8   2   1   1   3   7  10  14   -   5   2  11   2   4
  4
I Ile
  16   2   1  40   1   1   4   7   -  18   -   2   1   -  22   1   9   2  16   1   1   5   1   4
  3
K Lys
   4  11   7   -   -  11   9   -   4   -   2   9   6   1   -  12   6   3   3  17  10  11   5   5
  5
L Leu
   7   3   1  17   1   2   5  39   -  16   -   2   -   1  14   1   1   2  15   1   1  17   3   2
  3
M Met
   7   1   4   5   2   4   9   8   2  14   -   2   5   2   5   1   1   1   6   1   2   6   6  15
  1
N Asn
   5   4   2   -   -   4   3   -  16   -   6   2   6   2   -   3   6   -   2   9  29   3   4   3
  6
P Pro
   1   1   -   -   -   -   -   -   -   -   7  13  10   2   -   -   -   -   -   1   -   2   1   2
 14
Q Gln
   9   7  14   1   2  13  11   -   5   2   2  14   8  24   -   7   7   5   1  24  11   3   6   8
  2
R Arg
  14  11   7   -   1  15  13   1   2   2   1  20  14   3   1  14  24   3   2  10  14  17  22   6
  1
S Ser
   -   9   3   -  11   3   4   2   4   1  37   3  15   5   -  19   4   1   -   4   2   1   3   3
  4
T Thr
   5  12   2   3   1   4   3   6   -   3  20   5   9  39   2   3   4   1   3   4   4   2   2   5
  1
V Val
  11   2   1  15   2   1   1   6   -  21   2   3   2   3  40   -   7   3  10   -   -   1   2   3
  4
W Trp
   4   2   2   -   -   -   1   3   1   2   -   -   -   -   -   2   3  51   2   -   3   2   1   6
  9
Y Tyr
   2   2   1   -   -   1   5   5   4   6   1   1   2   3   5  17   9   7   2   1   1   6   9   6
  2
nulls
   2   -   2  11   8   3   1   6   5   7   4   1   3   4   9   4   1   4   5   2   3   1   -   -
 86

* Nulls refer the number of non occurring amino acids (marked as "-") in the row or column.