One-Block CYRCA Help

One-Block CYRCA is a program based on the CYRCA algorithm. The program allows users to check if a multiple sequence
alignment they   give is part of existing or new CYRCA sets of blocks (these sets are   actually multiple block 
alignments).

The multiple sequence alignment can be in the Blocks format (and include several blocks) or in the FASTA, CLUSTAL or
MSF formats. In the later case ungapped regions of the  multiple alignments at least 4 columns wide will be 
converted into blocks. These blocks will be shown to the user before she/he submits them to the program. To include
 a column with gaps in a block change the gap characters into Xs (character for unknown amino acid).

Since the program can some time take more than 15 minutes, or even few hours to run (depending on the size of the 
input and the load on our server, and the computer hosting it) we recommend giving an e-mail address to receive 
the output and/or noting the URL where the output will be placed. The ouput will be kept on our server for a few
days.

Please pay attention to any error or warning messages